Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Liver
Cell type
PLC/PRF/5
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
PLC/PRF/5
cell line
PLC/PRF/5
cell type
Hepatocarcinoma cells
chip antibody
RAD21 (Abcam, ab992)
genotype
PDS5B -dTAG
treatment
dTAG

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
20462202
Reads aligned (%)
64.5
Duplicates removed (%)
20.4
Number of peaks
22662 (qval < 1E-05)

hg19

Number of total reads
20462202
Reads aligned (%)
63.5
Duplicates removed (%)
22.6
Number of peaks
22098 (qval < 1E-05)

Base call quality data from DBCLS SRA